ElectroPhysiology.jl

ElectroPhysiology.jl is the core data I/O and data-structure package for electrophysiology workflows in Julia. It standardizes recordings into an Experiment object and provides utilities for:

• ABF file reading
• stimulus extraction/annotation
• trial/time/channel manipulation
• two-photon image stack handling
• ROI extraction and basic image transforms

Start Here

• Installation
• Tutorial
• API Reference
• Reorganization Plan

Related Packages

• PhysiologyAnalysis.jl for expanded analysis pipelines
• PhysiologyPlotting.jl for plotting/visualization

• Installation
• • Recommended: Use a Dedicated Environment
  • Install ElectroPhysiology.jl
  • Optional Companion Packages
• Tutorial
• • 1) Load ABF data
  • 2) Inspect and slice data
  • 3) Attach or inspect stimulus protocol
  • 4) Common preprocessing
  • 5) Two-photon workflow (image stack)
  • 6) Export
• ElectroPhysiology.jl API Reference
• • API Scope
  • Core Types
  • Base Overloads
  • Exported API
  • Exported Symbol Without Definition
  • Non-exported but Commonly Useful Functions
  • Optional/Legacy APIs (Not Loaded by Default Path)
  • Source-of-Truth
• Repository Reorganization Plan
• • Goals
  • Proposed Layout
  • Export Policy
  • Initialization Strategy
  • Documentation Strategy
  • Suggested Migration Steps
  • High-Value Fixes Before Reorg
• Roadmap
• • Near-Term
  • Mid-Term
  • Long-Term